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@@ -178,14 +178,17 @@ as some nucleotides may appear the same number of times
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in each column of the data matrix.
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If this is the case,
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the function we are using (`argmax`) returns the nucleotide with the most occurences that it first encounters.
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the function we are using (`argmax`) returns the nucleotide with the most occurrences that it first encounters.
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The way our function is written,
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we first scan for 'A', 'C', then 'G' and 'T',
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so the final consensus string will be biased towards more A's, then C's, G's and T's.
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This simply based on which nucleotide counts it will encounter first in the profile matrix.
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This is simply based on which nucleotide counts it will encounter first in the profile matrix.
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In the example below, there are equal number of reads indicating that the consensus string could be either `AAAAAAAA` or `GGGGGGGG`. However, because our solution scans for `A` first, the consensus string returned will be `AAAAAAAA`.
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In the example below, there are equal number of sequences that are all `A`'s and `G`'s,
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so the consensus string could be either `AAAAAAAA` or `GGGGGGGG`.
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However, because our solution scans for `A` first,
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